Public Vars
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Back
line-seq (clj)
(source)function
(line-seq rdr)
Returns the lines of text from rdr as a lazy sequence of strings.
rdr must implement java.io.BufferedReader.
Examples
PacktPublishing/Clojure-Programming-Cookbook
(require '[clojure.core.reducers :as r])
(use 'clojure.data.xml)
(use '[clojure.java.io :only [writer reader input-stream output-stream]])
(time
(with-open [in (reader (input-stream "test_0.xml"))]
(into []
(r/filter
(fn[x]
(= "Friend1"
(first (:content (parse
(java.io.StringReader. x))))))
(line-seq in)))))
PacktPublishing/Clojure-Programming-Cookbook
(use 'clojure.data.xml)
(use '[clojure.java.io :only [writer reader input-stream output-stream]])
(require '[clojure.core.async :as async])
(with-open [in (reader (input-stream "test_0.xml"))]
(doall
(pmap
#(async/>!! in-chan %)
(line-seq in))))
GenomicsAotearoa/Kakapo
(ns figures.core
(:require [quil.core :as q]
[clojure.core.matrix :as mat]
[clojure.core.matrix.stats :as stats]
[quil.middleware :as m]))
(def chr-lengths
(into
{}
(with-open [rdr (clojure.java.io/reader "data/chr_lengths.txt")]
(doall
(for [line (line-seq rdr)]
(clojure.string/split line #"\t"))))))
(with-open [rdr (clojure.java.io/reader "data/out.snpden")
wrt (clojure.java.io/writer "snpden.hist")]
(doseq [line (rest (line-seq rdr))]
(let [[chr start count vkb] (clojure.string/split line #"\s+")]
(.write
wrt
(clojure.string/join
" "
[chr
start
(+ (read-string start) bin-size)
vkb
"\n"])))))
(def founders
(into
#{}
(with-open [rdr (clojure.java.io/reader "data/founders.ped")]
(doall
(for [line (rest (line-seq rdr))]
(let [[_ bird & _] (clojure.string/split line #"\s+")]
bird))))))
(with-open [rdr (clojure.java.io/reader "data/bcftoolsroh_rgonly")
wrt (clojure.java.io/writer "founders.roh")]
(doseq [line (line-seq rdr)]
(let [[_ who chr start end _ _ score] (clojure.string/split line #"\s+")]
(when (founders who)
(.write
wrt
(clojure.string/join
" "
[chr
start
end
"\n"]))))))
(with-open [rdr (clojure.java.io/reader "data/bcftoolsroh_rgonly")]
(doseq [line (line-seq rdr)]
(let [[_ who chr start end _ _ score] (clojure.string/split line #"\s+")]
(with-open [wrt (clojure.java.io/writer (str who ".roh") :append true)]
(.write
wrt
(clojure.string/join
" "
[chr
start
end
"\n"]))))))